CDS

Accession Number TCMCG057C00353
gbkey CDS
Protein Id XP_018476847.1
Location join(1562776..1562788,1562879..1562964,1563152..1563223,1563320..1563382,1563719..1563805,1563954..1564119,1564221..1564342,1564529..1564645,1564735..1564830,1564918..1564977,1565406..1565480,1565584..1565688,1565874..1565990,1566102..1566179,1566281..1566365,1566454..1566505,1566661..1566731,1566822..1566949)
Gene LOC108847931
GeneID 108847931
Organism Raphanus sativus

Protein

Length 530aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018621345.1
Definition PREDICTED: pre-mRNA-processing factor 19 homolog 1-like [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category S
Description generation of catalytic spliceosome for first transesterification step
KEGG_TC -
KEGG_Module M00353        [VIEW IN KEGG]
M00355        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
ko04121        [VIEW IN KEGG]
KEGG_ko ko:K10599        [VIEW IN KEGG]
EC 2.3.2.27        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03040        [VIEW IN KEGG]
ko04120        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
map04120        [VIEW IN KEGG]
GOs GO:0000209        [VIEW IN EMBL-EBI]
GO:0000349        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000393        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0000974        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004842        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005684        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009617        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010035        [VIEW IN EMBL-EBI]
GO:0010038        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016567        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0019787        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0022618        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032446        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034622        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0042742        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046686        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0061630        [VIEW IN EMBL-EBI]
GO:0061659        [VIEW IN EMBL-EBI]
GO:0065003        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070534        [VIEW IN EMBL-EBI]
GO:0070647        [VIEW IN EMBL-EBI]
GO:0071006        [VIEW IN EMBL-EBI]
GO:0071012        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071826        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAATTGTGCAATTTCCGGGGAAGTTCCGGTGGAGCCTGTGGTTTCGAAGAAGTCTGGTTTGCTCTACGAGAAGCGCCTAATCGAGACGCACATCTCGGATTTTGGGAAATGCCCGGTTACTGGTGAACCGCATACCATTGGTGACATTGTTGCCATCAAAACCGGAAAGATCGTGAAGCCAAAACCATTACACACAGCTAGCATCCCTGGATTGCTCGGAACGTTCCAGACTGAATGGGATTGTTTGATGCTATCAAATTTTTCACTTGAGCAACAACTCCATACTGCGAGGCAAGAGCTAAGCCATGCTTTGTATCAGCATGATGCTGCTTGTCGTGTGATTGCTAGGCTTAAAAAAGAAAGAGACGAGGCACGACAATTGCTTGCAGAGACTGATAGGCAGTTACCTGCAGCGACTGATAGGCAGTTACCTGCAGCCCCCGAAGTTGCCACAGAGAATGCTACTCTTAGTAATGGTAAACGAGCTGCCGATGGTGGTGAACAAGGTCCCGATGCAAAGAAAATGCGTCTTGGAGTTTCGGGTGAAGTTATTACAGAACTGACAGATTGTAATGCTGCTCTTTCCCAGCAGCGTAAGAAGAGACAGATCCCTCCGACGTTGGCTTCAGTTGATGCTCTGGAGAAGTTCACTCAACTCTCAAGCCACCCACTTCACAAGACCAGCAAACCTGGTATTTTTTCAATGGACATCCTACATTCTAAGGATGTCATTGCGACCGGAGGAATGGATACAACTGCCGTTCTCTTTGATCGTCAGTCAGGACAAATCTTGTCGACGTTGACTGGTCATTCAAAGAAGGTTACTAGTATTAAGTTTGTAGGTGACACTGATCTTGTTTTGACTGCTTCATCAGACAAGACAGTTCGTATCTGGGGAAGTTCAGAGGGTGGGAACTATGCCTGTAAACATACATTGAAAGATCACACTGCAGAGGTGCGAGCTGTCACTGTCCATGCAACGAACAAATACTTTGTGTCGGCATCGCTCGACAGTACGTGGTGCTTCTATGATATGTCCTCTGGTTTGTGCCTTGCCCAGGTAACAGATGATTCCGAGAAGGTGGATTACACGGCTGCCGCTTTCCATCCTGATGGTCTCATTCTTGGAACTGGTACCGCTCAATCTATTGTCAAGATTTGGGATGTAAAGAGTCAGGCAAACGTGGCGAAGTTCGGTGGCCACACTGGTGAAATCACATCTGTATCATTTTCTGAAAATGGTTATTTCCTCGCGACATCTGCGCTGGATGGTGTTAGACTGTGGGACCTGCGCAAGCTAAAGAACTTCCGAACATTCGACTTTCCAAATGCAAACTCGGTGGAATTTGACCATAGCGGATCTTATCTTGGCATTGCTGCTTCAGATATAAGAGTATTCCAAACGGCCAGTGTAAAAGCCGAATGGAACCCAGTCAAGACACTTCCTGATCTATCCGGTACAGGTAGAGCAACATGTGTTAAGTTTGGTCCCGACGCCAAATACGTAGCAGTCGGTTCAATGGACCGTAATCTCAGGATATTCGGTTTACCTAGCAATGACAGCACTGAAGACTCTGCACAAGATTCATGA
Protein:  
MNCAISGEVPVEPVVSKKSGLLYEKRLIETHISDFGKCPVTGEPHTIGDIVAIKTGKIVKPKPLHTASIPGLLGTFQTEWDCLMLSNFSLEQQLHTARQELSHALYQHDAACRVIARLKKERDEARQLLAETDRQLPAATDRQLPAAPEVATENATLSNGKRAADGGEQGPDAKKMRLGVSGEVITELTDCNAALSQQRKKRQIPPTLASVDALEKFTQLSSHPLHKTSKPGIFSMDILHSKDVIATGGMDTTAVLFDRQSGQILSTLTGHSKKVTSIKFVGDTDLVLTASSDKTVRIWGSSEGGNYACKHTLKDHTAEVRAVTVHATNKYFVSASLDSTWCFYDMSSGLCLAQVTDDSEKVDYTAAAFHPDGLILGTGTAQSIVKIWDVKSQANVAKFGGHTGEITSVSFSENGYFLATSALDGVRLWDLRKLKNFRTFDFPNANSVEFDHSGSYLGIAASDIRVFQTASVKAEWNPVKTLPDLSGTGRATCVKFGPDAKYVAVGSMDRNLRIFGLPSNDSTEDSAQDS